Assaf, Rida; Xia, Fangfang; Stevens, Rick Detecting operons in bacterial genomes via visual representation learning Scientific Reports (2021)
Li, Zhozhao ; Chard, Ryan; Ward, Logan; Chard, Kyle; Skluzacek, Tyler J.; Babuji, Yadu; Woodard, Anna; Tuecke, Steven; Blaiszik, Ben; Franklin, Michael J. ; Foster, Ian DLHub: Simplifying Publication, Discovery, and Use of Machine Learning Models in Science Journal of Parallel and Distributed Computing (2021)
Getty, N.; Brettin, T.; Jin, Dong; Stevens, Rick; Xia, F. Deep Medical Image Analysis with Representation Learning and Neuromorphic Computing Interface Focus (2021)
Jha, Dipendra; Gupta, Vishu; Ward, Logan; Yang, Zijiang; Wolverton, Chris; Foster, Ian; Liao, Wei-Keng; Choudhary, Alok; Agrawal, Ankit Enabling deeper learning on big data for materials informatics applications Scientific Reports (2021)
Ramanathan, Arvind; Ma, Heng; Parvatikar, Akash ; Chennubhotla, Chakra Artificial Intelligence techniques for integrative structural biology of intrinsically disordered proteins Current Opinion in Structural Biology (2021)
Kneller, Daniel; Li, Hui; Galanie, Stephanie; Phillips, Gwyndalyn; Labbe, Audrey; Weiss, Kevin; Zhang, Qiu; Arnould, Mark; Clyde, Austin; Ma, Heng; Ramanathan, Arvind Structural, electronic and electrostatic determinants for inhibitor binding to subsites S1 and S2 in SARS-CoV-2 main protease Journal of Medicinal Chemistry (2021)
Feinstein, Jeremy; Sivaraman, Ganesh; Picel, Kurt; Peters, Brian; Vazquez-Mayagoitia, Alvaro; Ramanathan, Arvind; MacDonell, Margaret; Foster, Ian; Yan, Eugene Uncertainty-Informed Deep Transfer Learning of Perfluoroalkyl and Polyfluoroalkyl Substance Toxicity ACS Central Science (2021)
Kumari, Sunita; Kumar, Vivek; Beilsmith, Kathleen; Seaver, Samuel; Canon, Shane; Dehal, Paramvir; Gu, Tian; Joachimiak, Marcin; Lerma Ortiz, Claudia; Liu, Filipe; Henry, Christopher A KBase case study on genome-wide transcriptomics and plant primary metabolism in response to drought stress in Sorghum Current Plant Biology (2021)
Davis, James; Long, S. Wesley; Christensen, Paul A. ; Olsen, Randall; Olson, Robert; Shukla, Maulik; Subedi, Sishir ; Stevens, Rick; Musser, James M. Analysis of the ARTIC version 3 and version 4 SARS-CoV-2 primers and their impact on the detection of the G142D amino acid substitution in the spike protein Microbiology Spectrum (2021)
Hong, Zhi; Pauloski, J. Gregory; Ward, Logan; Chard, Kyle; Blaiszik, Ben; Foster, Ian Models and Processes to Extract Drug-like Molecules From Natural Language Text Frontiers in Molecular Biosciences (2021)